P. Veber, N. Yanev, R. Andonov, V. Poirriez, Optimal protein threading by cost-splitting, WABI 2005-5th Workshop on Algorithms in Bioinformatics, Mallorca, Spain, October 3-6, 2005 Lecture Notes in Bioinformatics, 3692, pp. 365-375.

R. Andonov, S. Balev, N. Yanev, High Performance Alignment Methods for Protein Threading, Chapter 18 in the forthcoming book, Parallel Computing for Bioinformatics and Computational Biology, edited by Prof. Albert Zomaya, Wiley & Sons, 2005, 429-460.

R. Andonov, D. Lavenier, P. Veber, N. Yanev, Dynamic Programming for LR-PCR Segmentation of Bacterium Genoms, Concurrency and Computation: Practice and Experience, 2005, Vol. 17, 1657-1668, Wiley & Sons

N. Yanev, R. Andonov, Parallel Divide&Conquer Approach for the Protein Threading Problem, Concurrency and Computation: Practice and Experience, 16(9):961-974, 2004

R. Andonov, S. Balev, N. Yanev, Protein Threading Problem: From Mathematical Models to Parallel Implementations, INFORMS Journal on Computing, 16(4):393-405, 2004

R. Andonov, N. Yanev, D. Lavenier, P. Veber, Dynamic programming for LR-PCR segmention of bacterium genomes, HiCOMB 2004, Third IEEE International Workshop on High Performance Computational Biology

N. Yanev, R. Andonov, Solving Protein Threading Problem in Parallel, In HiCOMB 2003--High Performance Computational Biology, in conjunction with IPDPS--International Parallel and Distributed Processing Symposium, April, 2003, Nice, France, IEEE Computer Society Press

R. Andonov, S. Balev, S. Rajopadhye, N. Yanev. Optimal semi-oblique tiling. IEEE Transactions on Parallel & Distributed Systems, September 2003, V14, 9, pp 944-960.