There are several specialized laboratories in the departments of the FMI, namely:
- Laboratory of Mathematical Modeling in Economics
- Statistical Laboratory STATLAB
- Interactive Multimedia Lab at the Department of Computer Informatics
- Research Laboratory of Information Technologies (RLIT) at the Department of Computer Informatics
- Laboratory of Mechatronics and Robotics, at the Department of Mechatronics, Robotics and Mechanics
- Laboratory of Technology Entrepreneurship and Innovation in Information Technologies at the Department of Software Technologies
- "Internet of Things" Laboratory at the Department of Computer Informatics
- Laboratory of Mechatronics and Robotics